Running PSORTb v3.0 on BWI76_RS20455 FitnessBrowser__Koxy:BWI76_RS20455 (714 amino acids)
SeqID: BWI76_RS20455 FitnessBrowser__Koxy:BWI76_RS20455 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Cytoplasmic [matched 15598210: fatty-acid oxidation complex alpha-subunit[Pseudomonas aeruginosa PAO1]] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Cytoplasmic 9.97 Periplasmic 0.01 CytoplasmicMembrane 0.01 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: Cytoplasmic 9.97 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>BWI76_RS20455 FitnessBrowser__Koxy:BWI76_RS20455 METVSAFTLEVRPDNIAVITIDAPGEKMNTLKAEFASEVRGIIRQIRDNKELRGAVFISA KPDNFIAGADINMIARCHSAQEAEALARQGQQIMAEIHGLSIPVIAAIHGACLGGGLELA LACHGRVCSDDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSGALEMILTGKQLRPRQAL KAGLVDEVVAQTILLQTAVELALKGRPASRAVPARERILAGPLGRSLLFRLVAKKTHHKT QGNYPATERILQVMETGLAQGCSSGYAEEARAFGELAMTPQSQALRSIFFASTDLKKDRG ADAEPVALRSVGILGGGLMGGGIAYVTACKGGLPVRIKDIQPRGINHALKYSWDLLDKQV RRRYLRASERDRQIGLISGSLDYQGFAHRDVVIEAVFEDLALKQKMVSEVEQHCRPETIF ASNTSSLPIGEIAAQASRPQRVIGLHFFSPVDKMPLVEVIPHIGTDRQTIATAVKLAKLQ GKTPIVVADKAGFYVNRILAPYINEAMRLLMEGEPVEHIDNALVKFGFPVGPIQLLDEVG IDTGTKIIPVLEAAWGERFSPPANIISSILNDDRKGRKNNRGFYLYAAKGRKSKKRPDPA IYSLLGISSPQARLSEQQVAERCVMMMLNEAARCFDERVVRSARDGDIGAVFGIGFPPFL GGPFRYMDTLGAGEVAAILQRLAAQYGPRFTPCDTLLHMAEQGATFWPAEERRT
Lawrence Berkeley National Laboratory