PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS20640 FitnessBrowser__Koxy:BWI76_RS20640 (323 amino acids)

SeqID: BWI76_RS20640 FitnessBrowser__Koxy:BWI76_RS20640
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596129: cysteine synthase B[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS20640 FitnessBrowser__Koxy:BWI76_RS20640
MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLK
PGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGM
KGAIQKAEEIVASNPEKFLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGG
TLTGVSRYIKGTKGKKDLITVAVEPTDSPVIAQALAGVELKPGPHKIQGIGAGFIPGNLD
LKLVDKVVAITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQQDESFTNKNIVVILP
SSGERYLSTALFADLFTEKELQQ