PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS21805 FitnessBrowser__Koxy:BWI76_RS21805 (492 amino acids)

SeqID: BWI76_RS21805 FitnessBrowser__Koxy:BWI76_RS21805
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027906: Putative sulfate transporter ychM]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS21805 FitnessBrowser__Koxy:BWI76_RS21805
MLLSSTRKDWLGNVRGDVLAGIVVALALIPEAIAFSIIAGVDPQVGLYSAFCIPLIMAFF
GGRPAMISSSTGAMALLMVTLVKDHGLQYLLAASVLTGIFQLIAGYLKLGSLMRFVSRSV
VTGFVNALAILIFMAQLPELTNVTWHVYAMTAGGLAIIYLFPYLNKTIPSPLVCIVVLTA
IAMWLHLDVRTVGDMGKLPDSLPVFLVPDIPLNLDTLLIILPYSAGLAVVGLLESMMTAT
IVDDMTDTPSDKNRECKAQGIANICTSFIGGMAGCAMIGQSVINVKSGGRGRLSTLTAGV
VLLCMVVFLRDLVSQIPMAALVAVMIMVSIGTFSWRSVVDLKSHPVSTSVVMLATVVVVV
ATHNLAFGVLTGVLIASLNFATKVARFLAVSSELREETRIYKVTGQVFFASADRFMAYFD
FREAVEKVVIDVTHAHFWDITSVSALDKVVIKFRREGTDVEIRGMNEATRTIVDRFGVHD
KPEEVEKLMGGH