PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS22930 FitnessBrowser__Koxy:BWI76_RS22930 (472 amino acids)

SeqID: BWI76_RS22930 FitnessBrowser__Koxy:BWI76_RS22930
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598778: |glycerol kinase|4013685 - 4015202]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS22930 FitnessBrowser__Koxy:BWI76_RS22930
MKKDVILVLDCGATNVRAIAVDRRGNIIARAATTNASDIAVENSAWHQWSLEAILQRFAE
CCRQISDPLSSCTVRGITVTTFGVDGALVDEQGKLLYPVISWKCPRTAAVMDNISRFMPA
QQLQQISGVGAFAFNTLYKLIWLKENHPQLLEKARAWLFISSLLNQRLTGEFTTDITMAG
TSQMLDIHQRDFSTQILQATGLPRRLFPRLVEAGQQIGTLQSDAAKMLGLAVGIPVISAG
HDTQFALFGAGAEQDEPVLSSGTWEILMVRSAQVNTPLLSHYAGSTCELDSQPGRYNPGM
QWLASGVLEWVRQLLWTPETPWQTLIDEARALPDGAQKVKMQCDLLSSPNAGWQGITLNT
TRGHFYLAALEGLAEQLANNLQTLQKIGHFNASELLLVGGGSRNALWNQIKANRLDIPIK
VLDDAETTVAGAAMFGWYGVGEFSSPEQARAQVSYQYRYFYPQTEPELIEGV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory