PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS23460 FitnessBrowser__Koxy:BWI76_RS23460 (409 amino acids)

SeqID: BWI76_RS23460 FitnessBrowser__Koxy:BWI76_RS23460
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 54042816: Inner membrane transport protein yqeG]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS23460 FitnessBrowser__Koxy:BWI76_RS23460
MSKIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAIVLFITALVAWPLTYWPHKALSQ
FILSANIAPGEGITGAVNHYYGKKIGSLITGLYFLAFFVVVLIYAVAITNSLAEQLSRHV
PITSQVRALLSLAVVLVLNLIFLMGRRVTIKVMGFLVFPLIACFLFLSIYLMGSWQPAYL
TSQMQLTPHTFHQIWISIPVMVFAFSHTPIISTFAIDQQEKYGEQAMGKCKKIMKVAYTL
ICASVLFFVFSCLLSIPAGYIETARNQGVTILSALSMMPGSPAWLAVTGIIVAVVAMSKS
FLGTYFGVIEGASEIVKTSLAQAGIRKSRAFNRAMSILLVSTLTFAVCFINPNAISMIYA
ISGPLIAMILFIMPTLSTYLIPTLKPYRSVGNFITLVVGLLCVSVMFFS