PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS23660 FitnessBrowser__Koxy:BWI76_RS23660 (501 amino acids)

SeqID: BWI76_RS23660 FitnessBrowser__Koxy:BWI76_RS23660
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS23660 FitnessBrowser__Koxy:BWI76_RS23660
MKDKILTIDVGTGSTRAAILRVDGTMVGFAQREYEQTTPRAGWSEQAPSLWWRAACECIR
EVLYRYPETVTQIAVIGACGQMHGTVLLDDCGELVEDRALLWNDKRSQPQVDAFAAREGR
EKWLAHLNNPPAAAWPAFKLAWWREHHPERWPKLAKVLMPKDYINFMLTGALATDYSEAS
CYFLMDSETRAWSSQACETFGLRVDQLPELKLSSDIIGQVTPRASDTTGLPVGIPVVAGT
SDMAASLLGSGVYEPGMASDSTGTSTLITVVSQRPLRHPLVNNLHLANAAWGGFTILDAG
GDAVRWARLALADNQITHPQLLQEAAAVPAGAEGLLFLPYLTGERLAEHTNSRAQFFGLQ
RKHRRGHLFRAVLEGVAFASWRNLRQLQACGQYPQQMIASGGGARSPLWLEIKAAAYNLP
ILSTRNQENGVTGCGIIAGVGAGLYADFASGVRQTVQFDKLISPDPRLRDYYQACSELFD
TLYQQSATLYDRLDALSAGPD