PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS24170 FitnessBrowser__Koxy:BWI76_RS24170 (418 amino acids)

SeqID: BWI76_RS24170 FitnessBrowser__Koxy:BWI76_RS24170
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84028771: Nucleoside permease nupG]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS24170 FitnessBrowser__Koxy:BWI76_RS24170
MNLKLQLKVLSFLQFCLWGSWLTTLGSYMFVTLKFDGAAIGAVYSSLGIAAVFMPTLLGI
VADKWISAKWVYAICHLVGALTLWLAAQVTTPGEMFLVILLNSLAYMPTLGLINTISYYR
LQSADMDIVTDFPPIRIWGTIGFILAMWAVSFSGFELSHMQLYIGAALSLLLVLFTLTLP
HIPVANQQKNQSWTAMLGLDAFALFKNKRMAIFFIFSMMLGAELQITNMFGNTFLHSFDK
DPLFASSFIVQHASVMMSISQISETLFILTIPFFLSRYGIKNVMLISIVAWMLRFGLFAY
GDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVEKEVRPEIRASAQGMFLMMTNGFGCIL
GGMVSGKVVEHFTVEGITDWQTVWLIFAGYSLVLAFAFVALFKYKHVRVPTGAQTVAH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory