PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS24195 FitnessBrowser__Koxy:BWI76_RS24195 (462 amino acids)

SeqID: BWI76_RS24195 FitnessBrowser__Koxy:BWI76_RS24195
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2499536: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS24195 FitnessBrowser__Koxy:BWI76_RS24195
MNKNDMSPLPTNTHEWFFNRNSIIILLDIVLFIVLYNTLPYEPKVVMGLSMLAFIAVLWL
TEALHVTVTAIMVPVMAVLLGVFNTQAALNSFANSTIFLFLGGFALAAAMHVQGLDKVIA
DKVLAMARGKMSLAVFMLFGVTALLSMWISNTATAAMMMPLVLGILSKVDSKNSHSTYVF
VLLGIAYSASIGGMATIVGSPPNAIAAAEVGLSFFDWMKFGFPAMIVLLPVAIAILYLVF
RPELKGTFETNSERVDWDKGKIVTLAIFALTVFFWIFSGPINDLLGGFKSFDTIVALGAI
ILVNFARVVHWKDIEKTADWGVLLLFGGGICLSNVLKETGTSLFLANQISGMVAHMGIFI
IILVIATFVVFLTEFASNTASAALLIPVFASVAEAFGMSPVILSVLIAIAASCAFMLPVA
TPPNAIVFATGHIKQQEMMRAGLFLNIACIIVLTGFSMLFWV