PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS26325 FitnessBrowser__Koxy:BWI76_RS26325 (531 amino acids)

SeqID: BWI76_RS26325 FitnessBrowser__Koxy:BWI76_RS26325
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS26325 FitnessBrowser__Koxy:BWI76_RS26325
MQTILKIDPTDNLIVALQDLRKEQQVNWNDEAYVLRSDVKAKHKFATEDIAPGDIVSLYG
VPVGKATRPIARGEAITTDNIKHYAAPVSLNDVAPYDWQQPDVFAWQQRTFKGIVREDGR
VATANYWLVIPLVFCENRNVQRVTDALNDALGYANNGLKNFARQVTSAGALNDTRHLPFP
HLDGIRCITVNSGCGGATSDSMTMCDVLAAYSDHPNVLGVTVFALGCEKARIVDFKAALA
KRNPNFSKPIIYFRQQDWSSEEKMMQDALTETYNAIREAPVAERQNVPLSRLKIGVKCGA
SDGFSGISANPAMGEVSDRLVALGGASGLAEFPELCGAEGDIVQRCTTRELKEKFLSLMK
NYEHVANFFGTTIADNPSPGNIADGLITDAIKSAGAAKKGGRAPVSAVCDYAEPMGESGL
SLVCTPGNDVDAVTGLVAAGCNVVIFSTGLGTPTGNPIVPVLKVSTNSALAKKMPDIIDY
DCGPIIEGTPLADIADGLFEKIIATASGTWRTKADALEQYDFMLWKRSLEL