PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS26365 FitnessBrowser__Koxy:BWI76_RS26365 (372 amino acids)

SeqID: BWI76_RS26365 FitnessBrowser__Koxy:BWI76_RS26365
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 33112643: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS26365 FitnessBrowser__Koxy:BWI76_RS26365
MGSLRMNMKGKALLAGCIALIMSGTAMAEDIKVAVVGAMSGPVAQYGDQEFTGAEQAIAD
INAKGGIKGNKLQMVKYDDACDPKQAVAVANKVINDGIKYVIGHLCSSSTQPASDIYEDE
GVLMITPAATAPELTARGYHLILRTTGLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGE
GLARAVQDNLKKGGANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQ
SRAAGLKTQFMGPEGVANVSLSNIAGASAEGMLVTKPKNYDQVPANKPIVDAIKAKKQDP
SGAFVWTTYAALQSLQAGLNQSEDPAEIAKYLKGATVDTVMGPLTWNEKGDLKGFEFGVF
TWHANGTATDAK