PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS26700 FitnessBrowser__Koxy:BWI76_RS26700 (550 amino acids)

SeqID: BWI76_RS26700 FitnessBrowser__Koxy:BWI76_RS26700
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131391: cytoplasmic trehalase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS26700 FitnessBrowser__Koxy:BWI76_RS26700
MFSQKLRNVDDDELRIENDPCYEADPYELKLDEMFDAEPEPEIIEGLPASDALTPADRYL
ELFAHVQKSRIFADSKTFPDCAPKQDPLDILIHYRRVRRTPGFDLRQFVEDHFWLPDSRA
EDYVSDPNRSLKEHIDNLWPVLTREPQDHIPWSSLLALPQSYIVPGGRFSETYYWDSYFT
MLGLAESGREDLLKCMADNFAWMIEIYGHIPNGNRTYYLSRSQPPVFALMVELFEEDGVR
GAKRYLDHLQMEYSFWMDGAESLIPNQAYRHVVRMPDGSLLNRYWDDRDTPRDESWREDV
ETAKHSGRPPNEVYRDLRAGAESGWDYSSRWLRDITRLASIRTTQFIPIDLNAFLFKLEN
TIANLSGLKGDRETEAAFRQKASDRRAAVTRYLWDDESGCFRDYDWRREQLALFSAASIV
ALYVGMATHEQADRLADAVRARLLTPGGIMATEYESGEQWDKPNGWAPLQWMAVQGFKMY
GQDPLGDEIAQSWLQTVNHYYKQHYKLIEKYHIASATPHEGGGGEYPLQDGFGWTNGVVR
RLIGLYGEPL