PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS26870 FitnessBrowser__Koxy:BWI76_RS26870 (327 amino acids)

SeqID: BWI76_RS26870 FitnessBrowser__Koxy:BWI76_RS26870
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168475: Oligopeptide transport ATP-binding protein appD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS26870 FitnessBrowser__Koxy:BWI76_RS26870
MALLNVDKLSVHFGDEGTPFRAVDRVSYSVNQGEVVGIVGESGSGKSVSSLAIMGLIDYP
GRVMAEKLEFNGRDLKRISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGYQIMEAIKVHQ
GGNKKTRIQRAIDLLTLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP
TTALDVTIQAQIIELLLELQQKENMALILITHDLALVAEAAHKIIVMYAGQVVETGDAKD
IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPSGCLLNPRCPYATDKCRSE
EPELNLLNGGRQSKCHYPLDDAGRPGL