PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on BWI76_RS27885 FitnessBrowser__Koxy:BWI76_RS27885 (540 amino acids)

SeqID: BWI76_RS27885 FitnessBrowser__Koxy:BWI76_RS27885
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 418458: Permease IIC component glvC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>BWI76_RS27885 FitnessBrowser__Koxy:BWI76_RS27885
MLSQIQRFGGAMFTPVLLFPFAGIVVGIAIMLRNPMFVGEALTAPDSLFAQIVHIIEEGG
WTVFRNMPLIFAVGLPIGLAKQAQGRACLAVLVSFLTWNYFINAMGMTWGHFFGVDFSVE
PTAGSGLTMMAGIKTLDTSIIGAIVISGLVTALHNRYFDKPLPVFLGIFQGSSFVVIVAF
LAMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWVYIFLERILIPTGLHHFVYGPFI
FGPAVVEGGIQVYWAQHLQAFSQSTEALKTLFPEGGFALHGNSKVFGSVGIALALYFTAA
PENRVKVAGLLIPATLTAMLVGITEPLEFTFLFISPLLFAVHAVLAATMATVMYICGVVG
NFGGGLLDQFLPQNWIPMFHNHASMMFIQIGVGVCFTALYFVIFRTLILRLNLKTPGREE
SEIKLYSKADYQAARGKTSAAGAADTKLGQAAGFLQALGGAGNIESINNCATRLRIALVD
MAKTQSDDVFKALGAHGVVRRGNGIQVIVGLHVPQVRDQLETLMKDSLQTEQTTMTEAVS