PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS02140 FitnessBrowser__Pedo557:CA265_RS02140 (820 amino acids)

SeqID: CA265_RS02140 FitnessBrowser__Pedo557:CA265_RS02140
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS02140 FitnessBrowser__Pedo557:CA265_RS02140
MEAQNDKTNETSDLIEKEQEIQHLNNPVDISVKPIVKQYLGAVKKVKKEGNRFYFSDGDA
RVEVRVVSDDIIRVRLAPHGVFLDDFSYAVPEVDQKVSVFKMQEHDDHFTISTHAVTCKI
EKANFHISFSDNITNVVMVDEANSMHWEENVDFGGYYIYATKKCHPEENFFGLGDKSGNF
NLRGRRFENWNTDAYSFGWNQDPLYRTIPFYIGLHNQAAYGIFFDNTFKSYFDFGSEDVN
KTSFWADGGELQYYYIHGPHIMDVVKRYATLTGTHPMPPKWTLGYQQCRWSYYPETKVKE
IAKQFRERKIPCDAIYLDIDYMDGYRCFTWNKKYFPDPRRMIKELSDDGFKTVVMIDPGI
KVDDDYWVFKEGKEKRFFCRRSDDYYMEGHVWPGRCQFPDFTNPKVRSWWGNLYKELVDM
GVAGFWNDMNEPAVFGSGTFPNDVRHNYDGYRGSHRKAHNVYGMQMVRSTYEGLKKLMRN
KRPFTITRAGYSGMQRYASVWTGDNIATWEHLKIGNIQCQRLSVSGVPFCGTDIGGFSGE
PDGELFTRWIQLGTFSPFMRAHSAGDTAEREPWSFGEFFEDINRKFIELRYRLMPYLYSV
FWEHHRYGFPILRPLVMLEQENISNSFRQDEFCYGDKLLICPVLEQGAISRKVYLPKGTW
YNFWTNEILDGGNEYTVDAKIDSMPMFVRAGTVLPEYPVMQYVDEKSITEVVLNIYHSDY
EVNSYMYEDHGDTFAYEQDIYLEKKFTVKGDAQAIKVNQRNEGLYTPNYEFYVCNVIGVK
FQVKKIIIDNKEVKDFYTDDQNILHFKCNKNFLEIQILSL