PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS02450 FitnessBrowser__Pedo557:CA265_RS02450 (262 amino acids)

SeqID: CA265_RS02450 FitnessBrowser__Pedo557:CA265_RS02450
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 15600592: DgcB, Dimethylglycine catabolism[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Extracellular          0.00
    Periplasmic            0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS02450 FitnessBrowser__Pedo557:CA265_RS02450
MEFKVPTMAELMAAGEEPEILFWVGCAGSYDERAQKITRDICKILHHVGIKYAVLGTEES
CTGDPAKRAGNEFLFQMQAMTNIEVLNAYNIKKIVTGCPHCFNTIKNEYPGLGGTYEVIH
HTQLIQDLINEGKLKAEGGESFKGKKITYHDPCYLGRGNGIYEAPRKALEVLDAQLVEMK
RCKSNGLCCGAGGAQMFKEPEKGNKDINVERIDEALQTNPQVIAAGCPFCMTMLSDGIKL
KDKEQEVKVLDIAEITARANGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory