PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS03630 FitnessBrowser__Pedo557:CA265_RS03630 (346 amino acids)

SeqID: CA265_RS03630 FitnessBrowser__Pedo557:CA265_RS03630
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598361: histidinol-phosphate aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS03630 FitnessBrowser__Pedo557:CA265_RS03630
MDINDLVRENIKNLRPYSTARDEFKGQASVFLDANENSYGSPLPANYNRYPDPLQLDLKD
AISKIKGVPIENTFLGNGSDEAIDLLFRAFCNPGKDNVIVLPPTYGMYEVSANINDVEIR
KVSLLPNFQLDMEKIAETIDKNTKLIFICSPNNPTGNSINREDIETILANFNGIVVVDEA
YINYARQKTFIQELTEYGNLVVLQTFSKAWGLAALRLGMAFSSTKVIDVLNKIKPPYNIN
QATQDLAFEALKNIAQVNDWIKESVAERDRLSKALTALNIVKKVYPSDANFILTEVTDAL
KIYDTLVDQGIIVRDRSKVTLCEGCLRITVGTKEENDKLLTVLENF