PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS03655 FitnessBrowser__Pedo557:CA265_RS03655 (277 amino acids)

SeqID: CA265_RS03655 FitnessBrowser__Pedo557:CA265_RS03655
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67466690: Ribose-phosphate pyrophosphokinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS03655 FitnessBrowser__Pedo557:CA265_RS03655
MLNLNPGFTPLGENNLIEYKSFLFAGGEPHIKISNNFDAALPITITHRINSFNDLGLICI
TVDALKRMGVKEIHLFIPYFPAARQDRVMIPGEPLSVKVYADIINAMALANVTIFDPHSE
VSPALLNNCVTISNHEFIKQVIAKIGTDVKLISPDGGALKKIYKVSEFLDGAEVIECSKS
RDVKTGKLSGFKVYAEDLAGADCLIVDDICDGGGTFIGLSEALKAKNAGKLYLAISHGIF
SKGFDELDKYFEQIFTTDSIKEVDHKGVTQIKLQKIL