PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS03895 CA265_RS03895 phosphoserine transaminase (365 amino acids)

SeqID: CA265_RS03895 CA265_RS03895 phosphoserine transaminase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141771: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS03895 CA265_RS03895 phosphoserine transaminase
MHKKHNFGAGPCILPSSVMEQAAQAVINWGGMGLSILEVSHRSPEFEDVVLKTQLLVREL
LSVPNHYSVLFLQGGASTQFAMVAMNFLSAGKKAAYLDTGYFAQKAIKEAKLFGEVELVA
SSKDKDYAYIPDQFNVDQESAYIHYTSNNTIEGTEIFDFSPNGVPVVCDMSSDIFSRKIN
VSDFDLIYAGAQKNMGPAGMTLVIAKNEFLNQAKKEIPSMMDYRIFRDNMSMYNTPPVFS
IYVAMLNLLWLKDQGGVSGIEQRNIEKAKLLYAEIDRNPLFYGTADVAHRSRMNVTFLAV
NKDVEGGFLKFAADQGIVGIKGYRTVGGFRASLYNALPLSSVEVLVNAMASFEKIYSDKT
VLELE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory