PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS04025 FitnessBrowser__Pedo557:CA265_RS04025 (1054 amino acids)

SeqID: CA265_RS04025 FitnessBrowser__Pedo557:CA265_RS04025
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS04025 FitnessBrowser__Pedo557:CA265_RS04025
MKRKLTILFTSLFIAGQISAQDLPSELQTPEVVSVNRLPMRASAFAFENQDLATKRAKEK
SEYFLSLNGTWKFNWVKDPRKRPTDFYKLDFDDKGWDNFKVPANWETNGYGTPIYVNQPY
EFAGRQLTGARMNPPFDIPADNNPVGSYRKKINIPANWSGRQVFISLGAVKSAFYIWVNG
KKVGYSEDSKLAAEFDITKYVKPGENTIALQVYRWSDGTYLECQDMWRISGIEREVYLYS
TPKLDIRDFKVIGNLDATYTNGLLNVDLAVENYKIDQRTNHSRPDSFYVALDLVDAKGNN
VWKDATTIQKVLGNYKTDLSFKTQISNVKNWSAEIPYLYTLYITLKDKNNKIIEVIPQRV
GFRSVEIKGSDLLVNGKRVFLKGVNRHEHNATQGHTLTHADMEKDMEMMKKLNVNAVRHS
HYPPDPYWMELCDEYGLYVIDEANIESHGRYYSLETTFANDKQWRIPHLERITRMYERDK
NHASVITWSLGNEAGNGVNFYEAYQWLKGKDFRPVQYERAESDFNTDMIVPQYPSPNYLP
RYSKQDKETRPFIMSEYAHIMGNSLGNFKEYWDAIENNPKLQGGFVWEWIDQAIDTVKNG
KRIMAYGGDFPLSGPVDENFSDNDFCVKGVVTAYRGMTPMAVELKKVHQYIKTTFNGNNQ
INVNNSYFFKDISNVQLNWELVEDGKVIENGVVSNLNVGARQTQMLSLPFKTNYAAGKEY
FLNVHYRLKTAEPFLEKGYEVAYEQIALAGTPKANVYNSNKKALKVEQTAEKAVVKGSDF
TITFDLIKGTLASYVSKGQELLASGPQPGFYRAPTDNDIGAGLNTKLRMWRNVYQDNNTS
NIKSTINSTADGFILTVKSSLLKGDAETTQEFNVSADGTVKVNNQFKAVTGNYKSLMRIG
NDLQLKNDYSNIQWYGRGPGENYVDRKTASLIGTYKSTVSDQYFPYARPQESGNKTDVRW
VTFTNKAGKGLRFEFADQLLNFNALPYSVEDLDPEAEKKQYHSGELVKRNQIYVHMDMQQ
LGVQGIDSWGSMPLIQYQIPFKDYQYSYYIKPIK