PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS05020 FitnessBrowser__Pedo557:CA265_RS05020 (393 amino acids)

SeqID: CA265_RS05020 FitnessBrowser__Pedo557:CA265_RS05020
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595234: tryptophan synthase beta chain[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS05020 FitnessBrowser__Pedo557:CA265_RS05020
MKYKVNEKGYYGDFGGAYIPEMLYPNVEELRQNYLKIIDDADFQKEFHQLLKDYVGRPSP
LYLAKRYSERYGANIFLKREDLNHTGAHKINNTIGQILLAEKLGKKRIIAETGAGQHGVA
TATVCALRNLECVIYMGEVDIERQAPNVARMKMLGAKVVPASSGSKTLKDATNEAMRDWI
NNPVDTHYIIGSVVGPHPYPDMVAIFQSIISEETKKQLLEQTGSDQPDYVLACVGGGSNA
MGMFYHFMDDENVKLIAVEAAGKGVSSGFSAATTYLGKEGVLHGSRSILMQTEDGQVVEP
HSVSAGLDYPGIGPQHAHLFKTGRGQYVSITDEESLDAGLLCTQLEGIIPAIESAHALAY
LEKMEFKGGENVVVCLSGRGDKDLDTYIKYFNL