PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS08865 FitnessBrowser__Pedo557:CA265_RS08865 (322 amino acids)

SeqID: CA265_RS08865 FitnessBrowser__Pedo557:CA265_RS08865
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    CytoplasmicMembrane    2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS08865 FitnessBrowser__Pedo557:CA265_RS08865
MSVLVYVEQAEGKFKKSVFEAVSYAKAIADQQSTQLTAISIGDVADSELKELGKYGASKV
LNVSSDQLKTFVNQAYASVIAAAAEKEGADIVVLSNSFSGKGLAPRIAVKLKAGLADGAV
ELPSNDGKFSVKKTAFSGKAFAITELTSANKVIALNPNAFGVKENATDAAIEVFTADVKQ
SDLGTVIKEIVRATDKVSLPDAELVVSAGRGLKGPENWGMIEELAGLLGAATACSKPVSD
ADWRPHSEHVGQTGIAISPNLYIAIGISGAIQHLAGVSSSKVIVVINKDPEAPFFKVADY
GIVGDAFEVVPKLIEALKAHKG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory