PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS10640 CA265_RS10640 methylcrotonoyl-CoA carboxylase (542 amino acids)

SeqID: CA265_RS10640 CA265_RS10640 methylcrotonoyl-CoA carboxylase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS10640 CA265_RS10640 methylcrotonoyl-CoA carboxylase
MNIEFNKNEDVNKQLVYELKTRLKKIYLGGGEKNAAKQKEKGKLLARERIAYLIDKDSNF
LEVGAFTADGMYAEQGGCPSAGVVCGIGYVSGRQCMIVANDATVKAGAWFPMTAKKNLRA
QEIAMENRLPVIYLVDSAGVYLPMQDEIFPDKEHFGRMFRNNAIMSSEGIVQISAIMGAC
VAGGAYLPIMSDEAMIVDKTGSVFLAGSYLVKSAIGEEVDNETLGGATTHCEISGVTDYK
HLNDQACLDSIRNIMSMLGAPQNAGFDRIKPAKPKEKEEELYGILPENRDKPYEIMDIIN
RLVDGSEFEEYKKGYGQSIVCGLGRIDGWAVGIVANQRKVVKSKKGEMQFGGVIYSDSAD
KATRFIMNCNQKKIPLVFLQDVTGFMVGSRSEHGGIIKDGAKMVNAVANSVVPKFTIVLG
NSYGAGNYAMCGKAYDPRLIYAWPTAKIAVMGGSQAAKTLLQIQEASLKAKGEVITPEKE
AELLKEITDRYDSQTTPYYAASRLWVDGIIDPLETRKVISMGIEAANQSPITKKFNVGVI
QT