PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS11590 FitnessBrowser__Pedo557:CA265_RS11590 (902 amino acids)

SeqID: CA265_RS11590 FitnessBrowser__Pedo557:CA265_RS11590
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 30923261: Cytochrome c-552 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.44
    Cytoplasmic            0.33
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
  Final Prediction:
    Periplasmic            9.44

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS11590 FitnessBrowser__Pedo557:CA265_RS11590
MKTTFTLLLSALAFVFISATTLNKNIYESKAFEFFTKSKIDTPDQDRFVKVTLAQGEFTE
PTEMTILPNLDILVAQRRGEVLIYKNQTKKIKEAGKLDVYFKTSVPDVNAEEGLLGMAAD
PKFAVNQYIYLFYSPFDKSVNRLSRFKLINDQIVKESEKIILEFYSQREICCHTGGSIAF
GSDNLLYVSTGDNSTPFDVPKQQYVNKGYAPLDNRKGLEQYDARRSAGNTNDLRGKILRI
KVNEDGTYSIPDGNLFSKNDPKARPEIYVMGNRNPYRISVDQKNNFLYWGEVGPDASNDD
ALRGPRGYDEVNQARKAGNFGWPLFVGNNYAYKAYDYTNGANGNAFDPESPINNSPNNTG
LEKLPAAQPAFIWYPYGASKEFPQVGAGGRTAMAGPVYYATANSPYPAYYNGKLIIYEWV
RGWVKAVTMNAQGDYLSMEPFMAKVSLAAPIDMELGPDGKIYVLEYGKGWFTKNPDAAIT
RIDYLKGNRPPTVEDLNIAKTSGLLPYKMTATVTAKDPDGDALTYIWNLGKGVTKTTTIP
TIQHTYTKAGEYPLSVTVMDKSKASAKSQVIPVFAGNEHPNVNIDLAGNKSFYFPNKPVD
YKVLVSDKGAKVNNSRIYISNTYTEGSDLAGAQLGHQQAAQTLVGKTIMLKSDCSTCHKE
AAVSIGPAFNKIAAKYKNDSKAVDYLASKVIAGSHGVWGEVPMPAHTTMKEAEVKKITEW
IMTLGNKEAVKASLPTSGKIVPPAATDKKKSVLTLKATYTDAGAAGLKPLTTTNLINLKS
SVIDADDIKDFGGFQRKDVFGGEKLVLTKDNGWLALKNIDLTGISGFGFSFLNLDPGADG
EIEIRLDDSKGIMIGKSTFRKSIPINMLSDGKFHSIYFVFKELKTSDKKNRPIIQSITVE
PK