PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS12480 FitnessBrowser__Pedo557:CA265_RS12480 (323 amino acids)

SeqID: CA265_RS12480 FitnessBrowser__Pedo557:CA265_RS12480
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 59802551: Glucose--fructose oxidoreductase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS12480 FitnessBrowser__Pedo557:CA265_RS12480
MEEIRWGIIGCGDVTEVKSGPAFNKVNHAKLVAVMRRDGEKAADYARRHQVPKWYDDATQ
LINDPEVNAIYIATPPLQHEAYTIEALKAGKPVYVEKPMTLDADAAQRMTDAANQLKVKL
SVAHYRRAQPMFLKVKELLAAHSIGDIRLVRLKMLQSPNPALIAKTADNWRINPAISGGG
LFHDLAPHQLDLMTYYFGAVKNAIGIATRQQENTEVDDLVAGNILFENGIVFSGTWCFSV
APQDQADICVIYGSKGHISFPMFGNKITVTTDQTAEFVFEPLQHVQQPMIEKVVDYFLGK
GQNPCSGEDALITMKLMDDFTRK