PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS15710 FitnessBrowser__Pedo557:CA265_RS15710 (701 amino acids)

SeqID: CA265_RS15710 FitnessBrowser__Pedo557:CA265_RS15710
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS15710 FitnessBrowser__Pedo557:CA265_RS15710
MLTLICTVLFFGNAFGNVPGEDLKSPDGNLVVSFALAEGGVPTYSLKYKGKDVIKTSKLG
LELKDGKSLLDGFTITDTKTSAFNETWKPVWGEVKEIVNHYNELAVTLTQKETNRYIIVR
LRLFNDGLGFRYEFPEQKNLAYFVIKEEKTQFALAGDHKAFWLPGDYDTQEYSTVTSNLS
EVRGKMKAAVTPNASQTTFSPTGLQTPLMMKSKDGLYINIHEAALINYSLMSLNLDDKNM
VLESWLTPDAIGDKGYMQAPCLSPWRTIIVSDKAGDILTSKLTYNLNEATKFKDVSWIKP
TKYVGVWWEMITGKSTWAYNDLTSVQLGVTDYAKTKPNGKHAANTAHVKEYIDFAAKNGL
DAVLVEGWNEGWEDWFGKTKDDVFDFVTPYPDFDVKELHRYAASKGIKMIMHHETSSSVR
NYERHLDTAYKFMKANGYDAVKSGYVGNMIPRGEHHYGQWLNNHYLYAIQKAAEYKIMVN
AHEAVRPTGLARTYPNLIGNESARGTEYEAFGGNNADHTTILPFTRLIGGPMDYTPGIFE
TKVSVYNPENISFVHSTLARQLALYVTMYSPLQMAADLPETYNKYMDAFQFIKDVAVDWD
DTKVLEAEPGDYITFARKAKGKNNWFVGRTNDEVARTSKIDFSFLDPGKKYTATIYADAK
DAHYETNPKAYTIRKMEVSNKTKLSQYCAPGGGYAISIMAK