PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS15795 CA265_RS15795 dihydroxy-acid dehydratase (560 amino acids)

SeqID: CA265_RS15795 CA265_RS15795 dihydroxy-acid dehydratase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS15795 CA265_RS15795 dihydroxy-acid dehydratase
MSELNKYSKTFTQDPTQPAAQAMLYGIGLTDADMAKAQVGIASMGYDGNTCNMHLNDLAK
DVKKGVWKNDLVGLVFNTIGVSDGMSNGTDGMRYSLVSRDVIADSIETICGGQYYDGIIS
IPGCDKNMPGAIMAMARLDRPSIMVYGGTIAPGHYKGEELNIVSAFEALGQKICGNLSEE
DYQGIIKHTCPGAGACGGMYTANTMASAIEALGMSLPYSSSNPAISEEKKQECLDAGKYI
KILLEKDIKPSDIMTRKAFENAIRSIIILGGSTNAVLHFIAMGKAIGIEITQDDFQRMSD
VTPVLADFKPSGKYLMQDLHQYGGIPAVLKYLLNEGLLHGDCLTVTGKTVAENLADVKSI
MDYDQKIIQKLSEPIKATGHLQILYGNLAEKGSVAKISGKEGEKFEGPARVFDGEHDLIA
GISSGRVQPGDVIVIKNSGPVGAPGMPEMLKPTSAIIGAGLGKSVALITDGRFSGGTHGF
VVGHITPESYKGGLIGLVEDEDRILIDAVNNIINLQVSDEVIAERRKNYVQPALKVTKGV
LYKYAKTVSDAASGCVTDEY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory