PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230 (652 amino acids)

SeqID: CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS16230 FitnessBrowser__Pedo557:CA265_RS16230
MRNTFKKLAILALSFSFTTVFAQETPKEEDFFKINKVRVPEGPILEVGGLITLPNGDLGI
STRRGEVYIVENPTSAKPYWRRFAYGLHEILGIAYKNGAIYVAQRGELTKLVDKDQDGKA
DVYETIYAWPLSGHYHEYSFGPKLMPDGTFMVTANVAFGDEEWWRAESRVPMRGWAMNIT
EDGKMSPYAAGFRSPAGIGSIDGQFYYTENQGDWVGSGGLWKVNKGDFMGHPASLRWTNL
PNSPVKLQSDFFYSQIDERRTKNEQGRYIKPENRVNETFKTLFDMKKVFPELRLPSVWLP
YGILGISSAEPVKIPANTFGPFAGQILVGDQGMSIISRIFMETVKGEEQGAAFLFRKGFR
SGVLRLEWGTDGSLFVGETNRGWGSAGDANEGLERLVYNNKTPFEMKAVRAMPDGFEVEF
TMPVDRKSAEDLASYDAESFIYKYHPVYGSPPVNTEKLKISGVKVSADGLKARIIVQNLR
QYYIHTLTLDGLRSQDGFYSLVHPVAYYTLNQIPDGNKLSASEVSTKNSAAPVNVPAKKT
AAPKATGKTPEAKGTTTPAKPAATAKAPTFKEVEGLLTKNTCLACHNQTKRQIGPPFVEI
AKRKYSAEKIFQLIHNPQPQNWPGYSTEMPPMPQVTKAEALKIAGWINSLNK