PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS18440 CA265_RS18440 glycoside hydrolase (506 amino acids)

SeqID: CA265_RS18440 CA265_RS18440 glycoside hydrolase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 547728: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS18440 CA265_RS18440 glycoside hydrolase
MFKTKYILAFLMCCSISTFAQQPTPQWRPTYHFTAPSNWLNDPNGLIYLNGEFHLYYQYN
PFENKWGHMSWGHATSKDLVNWKHLPVAIPEKITKDTTTMIFSGSAVLDKRNVSGLGKGK
APVVAFYTADLPKQRNESQYMAYSNDGGLSFTNYAKNPIIDLNKKDFRDPNVWWHESTQQ
WIMTVAMVDEHQARFYGSKNLKDWTMLSDFGKQGNQGSGWECPFIIPLAVDGNKDNTKWV
LAISLFGPKGPTMQYFVGDFDGKTFKNDNDGKLTLLVDEGDSFYAAIPWNDAPKRQRILL
GWLQPGGKETFPWKGQMSIPRDLALKTTPEGIRLFQQPASLIGDNMKKHSGGKVITRQNL
IIDQHIDLGTSQNSYWIDAEFSVSDAEKIGFKLAQLKDEKGNVVKEVEVGYDAIKKQLYV
DCTRSEKGIKNDKNIIQTAAVNSVNGKIKLQVLFDKSSLEVFGNAGEKVISTMIFPDEKA
TGLAAFSNGGKAVLNKLKVWDMSGRK