PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS19000 CA265_RS19000 NADP-dependent malic enzyme (771 amino acids)

SeqID: CA265_RS19000 CA265_RS19000 NADP-dependent malic enzyme
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS19000 CA265_RS19000 NADP-dependent malic enzyme
MSKTTRKQDALDYHSQGRPGKIQVVPTKPTTSQRDLTLAYSPGVAEPCLKIAENKEDVYK
YTAKGNLVAVISNGTAVLGLGDIGPEAGKPVMEGKGLLFKIFADIDVFDLELDTKNVDDF
VKIVKALEPTFGGVNLEDIKAPECFEIERRLKEEMNIPVMHDDQHGTAIISAAALLNACE
IFKKKMDKIKIVVNGAGAAAISCTKLYVSLGAKKENIIMCDRSGVIRKDREVLDEIKAEF
ATDRKISTLAEAMKDSDVFIGLSSADCVTAEMLTSMAKNPIVFAMANPNPEIAYELAIKT
RKDIIMATGRSDYPNQVNNVLGFPYIFRGALDVRATGINEPMKIAAVKAIAELAKKSVPE
AVNLAYNARNLKFGKEYIIPKPVDFRLITEVSIAVAKAAIESGVARKIITDWDAYSEELR
KRLGLDDAIMRAITTKAKTDPKRVVFAEADNYKILKAAQIVNDENIAIPILLGNKDKIQA
IIDEHGLELEGVEIIDQMQNPDKTKQYAEALYQKRQRKGVSLTDATKLLRDRNYYGASMV
EFGEADAMISGLTKNYGSTIKPALHVIGVDPSVKRVAGMYMMMTKKGPVFFGDTTVNVDP
TAEELVDITLLLDKSVKQFNIKPRIALLSYSNFGSNDGVTPNKVRETVKLLHKNHPEVIV
DGEMQGNFAINNELLKDNFPFSTLADAPANTLVFPNLESGNIAYKLLQELGGAEAVGPIL
LGLNKPVHIVQLGSSVREIVNMVTIAVVDVQAKEEIATSKRKGIFGKTTKK