PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS21610 FitnessBrowser__Pedo557:CA265_RS21610 (502 amino acids)

SeqID: CA265_RS21610 FitnessBrowser__Pedo557:CA265_RS21610
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 81313488: Glutamyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS21610 FitnessBrowser__Pedo557:CA265_RS21610
MDKKVRVRFAPSPTGGLHLGGVRTALFNYLFAKRNNGTFVLRVEDTDQNRFVEGAEQYIV
NCLDWCGITPDESPDNPGAYGPYRQSERKPSYRKFAEQLISDGYAYYAFDTPEDLDAKRK
EIPNFQYGQATRMQMRNSLTLTISEVEELLAAKTPHVIRIKVPADEIVHFNDLIRGDVSF
ETSLVDDKVLLKADGMPTYHLAVVVDDKAMEITHAFRGEEWLPSAPVHILLWKYLGWEAD
MPAWAHLPLILKPDGHGKLSKRDGDRLGFPVYAMNWTDPKTGDVTKGFKEMGFMPEAFIN
MLALLGWNDGTDQELFSLKELEEKFSIERISKAGAKFDFEKAKWYNHEWIKSQGAERLAP
TVKEELEKAGIEVNDHAFLNTVIDLIKDRCTLLPDFVAQSSYFFASPEVYDVNSVKPKWT
VEKADFFNAFADGLTLTDAVSAEAAFKALAEEKGFKPGELMLPFRIMLVGGKFGPGVFDI
AVLLGVAETKTRITKAIAVFNS