PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS22865 FitnessBrowser__Pedo557:CA265_RS22865 (583 amino acids)

SeqID: CA265_RS22865 FitnessBrowser__Pedo557:CA265_RS22865
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 81855910: Putative multidrug export ATP-binding/permease protein SAV1866]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS22865 FitnessBrowser__Pedo557:CA265_RS22865
MGLLLNYLKHHKWIVALALLLAGINIGFSLLDPYITGRILDRFINKKDSLTYNQYLWGSL
GLIGLAIGAAMVSRIAKNFQDYFTSVIVQKVGAKMYADGLQHSLKLPYQIFEDQRSGETL
GILQKVRLDSEKFITSFISILFVSLIGMIFVIVYSVSVSYKVTLVYFSAIPIISFVSWFL
SRKIKTIQRSIVGETTALAGSTTESLRNIELVKSLGLADQEIDRLNKTTYKILGLELKKV
KYVRSMSFVQGTTVNLVRSTMVLVLLLLIFDNTISAGQYFSFLFYSFFLFGPLQELGNVI
LTWREAEVSLGNFKKILSTPVDKKPENPTSIAKIKDLTFNNVGFKHLTANRNALDNISFK
THHGQTIAFVGPSGSGKSTLVKLLVGLYPAKDGEILYNGIPSNDIDLDALREKIGFVTQD
TQLFSGTIRENLLFVNPNATDEECYKVLNQAACQTLLARADKGLDSLIGEGGVKVSGGEK
QRLSIARALLRQPDILVFDEATSSLDSITEEEITKTIRSVSDLTDHITILIAHRLSTIKH
ADKIYVLEKGNIIEEGRHEELIAQNGLYQAMWRQQIGERVVEA