PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS23135 FitnessBrowser__Pedo557:CA265_RS23135 (302 amino acids)

SeqID: CA265_RS23135 FitnessBrowser__Pedo557:CA265_RS23135
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141694: Glycine betaine/L-proline transport ATP-binding protein proV]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS23135 FitnessBrowser__Pedo557:CA265_RS23135
MGNYAIETVGLNFNFGNQVIVKDLSLQVPKGSIYGFLGPNGAGKTTTIKILLNLLKSPSD
QVFIFGKEINSNRIATLKRIGALVEQPAIYGHLTGKENLINRCILLGIKKNKADEMLALV
GLTEAANKKANKYSLGMKQRLGIAQALISDPELLLLDEPTNGLDPNGIIEIRNLMIDLAT
KHQKTILVSSHLLAEIERTATHVGIINKGQLLFQGTINELHLLSKPMLEIEVDKIESASS
FLTKSGYEIAAKTDRVITIPFTSSQNSGELNTLLIQNGFTVSSLYQQRKDLENLFLDITK
TN