PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS23440 FitnessBrowser__Pedo557:CA265_RS23440 (1233 amino acids)

SeqID: CA265_RS23440 FitnessBrowser__Pedo557:CA265_RS23440
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS23440 FitnessBrowser__Pedo557:CA265_RS23440
MGIREELEKRILVIDGAMGTMIQRYTLTEEDFRGERFKNHPCDVKGNNDLLNITRPDIIK
TIHLEYLASGADIIETNTFSTQRISMADYQMEDLSYEMSFEGARVAKEAVNEFMAANPDR
KCFVAGAIGPTNRTLSMSPNVNDPGFRAVYFDELEAAYYEQVRGLVDGGSDVLLIETIFD
TLNAKVAIVAIKKYEEVIGRKLEIMISGTITDASGRTLSGQTAEAFLNSVMHAKPLSIGF
NCALGAKEMRPHIEELAAKAGCYVSAYPNAGLPNEFGAYDEQPHETAHLVDDFIASGFVN
IVGGCCGTTPEHIGCIAKNARKAEPRKIPVLEPYMRLSGLEPVTITPESIFVNIGERTNI
TGSPKFSKLILGGDYEAALAVALQQVEGGAQVIDVNMDEGMLDSEAAMTKFLNLIASEPD
IAKLPIMVDSSKWSVIENGLKCLQGKGIVNSISLKEGEDKFRESARKIMQYGAAVVVMAF
DEQGQADNYERRKEICKRSYDILVNEIGFPAEDIIFDPNILTVATGLEEHNNYAVDFINA
TRWIKENLPHAKVSGGVSNISFSFRGNNTVREAMHSAFLYHAIQAGLDMGIVNAGMLEVY
QEIPPELLERVEDVLLNRRDDATERLVEYADTVKSKGKEVVKDEEWRKGSVEERLSHSLV
KGIVEYLDDDVEEARQKYARPIQVIEGPLMDGMNIVGDLFGAGKMFLPQVVKSARVMKKA
VAYLLPFIEQEKLDNPDQDQNSSAGRVLMATVKGDVHDIGKNIVGVVLACNNFEIVDMGV
MVPAQEIIKKAKEINADIIGLSGLITPSLDEMVHFAKEMEREGFTIPLIIGGATTSRIHA
AVKVAPNYSGPAIHVLDASRSVTVCSTLMNPETKDEYVAGIRAEYDKAREAHLNKRSDKR
FKTLEEARENRFKIDFQPNLPVPEFTGTRVFDNYPLEELVPYIDWTPFFHTWELRGSYPK
IFDDKNVGDEAKKLFDDAQTLLKRILDEKLLTARAVIGFWPANTVGDDIQLTVDSSQLSN
DSKLKTENSQLVTIHTLRQQAEKVDGQPYYALSDFIAPKESGIQDYFGGFAVTAGIGIDE
LVNEFESNYDDYNSIMAKALADRLAEAFAERMHERVRKEYWGYAQDENLSNQELIKEEYA
GIRPAPGYPACPEHTEKGTLFQLLDAENKIGLHLTESYAMYPTAAVSGFYFAHPDSRYFG
LGKITKDQIEDYAIRKNMPVEEVERWLSPNLAY