PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CA265_RS23960 FitnessBrowser__Pedo557:CA265_RS23960 (359 amino acids)

SeqID: CA265_RS23960 FitnessBrowser__Pedo557:CA265_RS23960
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2498933: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CA265_RS23960 FitnessBrowser__Pedo557:CA265_RS23960
MKNTALTEKHIALGAKMVPFAGYNMPVTYEGINAEHATVRNGVGVFDVSHMGEFILKGEN
ALDLIQRVTSNDAAKLYDGKVQYSCLPNKDGGIVDDLLVYKIDDKTYMLVVNASNIEKDW
NWIQQFNSKDVEMHNISDQTSLLAIQGPKAADALQTLTDVDLASMEYYTFVKGTFAGVDN
VVISATGYTGAGGFEIYFENQYADQIWDAIFKAGAPYNIQPIGLGARDTLRLEMGFCLYG
NDIDDSTSPIEAGLGWITKFSKSFTNSEALLAQKEAGIQKKLVGFEMIDRGIPRHDYEIA
DAEGNIIGKVTSGTQAPSLQKAIGMGYIAKDFTKEGTEVFILIRNTPIKAKVVKFPFYK