Running PSORTb v3.0 on CCNA_00096 FitnessBrowser__Caulo:CCNA_00096 (292 amino acids)
SeqID: CCNA_00096 FitnessBrowser__Caulo:CCNA_00096 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Periplasmic [matched 2498162: Periplasmic protein] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: Periplasmic 9.44 Cytoplasmic 0.33 Extracellular 0.11 CytoplasmicMembrane 0.06 OuterMembrane 0.06 Final Prediction: Periplasmic 9.44 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>CCNA_00096 FitnessBrowser__Caulo:CCNA_00096 MSNKRFSLALHGGAGAKRGHDYGVEIAHMRGLVEAARDRLAAGAGALDVAVETVVGLEAS GLYIAGKGASPNADGEYELDASLMDGATLRAGSVAALQGFKSPILAARAVMEHTPHVMLA GQGAIAFAREQGLETVEDPDAWFTRAGAFEDNHPPDALPTGTVGCVVRDGEGRLAAATST AGVFGKRPGRVGDSPIIGAGAWADGHAAVSCTGQGEYFIRAAVAAQIAHRVRFGGEALDA AAQAAIDSVAALGGHGGLIAVDRDGNIAMPFVSSGLKRAALMPDGTIVSAAF
Lawrence Berkeley National Laboratory