PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00775 CCNA_00775 aspartate aminotransferase (385 amino acids)

SeqID: CCNA_00775 CCNA_00775 aspartate aminotransferase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598993: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00775 CCNA_00775 aspartate aminotransferase
MVHPVFDNLPTTIFERMSGLARQYGAINLGQGFPDDQGPLPVREAAARALIEGSNQYPPM
RGLPELRAAVAGHYGRTQDLTLDPDTEIVVTSGATEALAAAFTSLISPGDEVVLFQPLYD
AYLPLVRRAGGVPRLVKLSPPHWRFERAMLEAAFSNRTRMVVLNSPLNPAGVVAPDEDLA
LLAEVCVRHDVVAVCDEVWEAVVFDGRRHRPLMSFPGMRERTVKIGSAGKLFGMTGWKVG
FLCAAPPLARALAAAHQFLTFTTPPNLQAGVAWGLDNHRAWFDDMPANLQRSRDRLTAGL
RDAGYVVLESQGTYFLNVDLAASGIALDDVTFCERCVTEHGVAAIPVSAFFAEDPVTTVV
RLCFAKADATLDEAVRRLAAAKAAL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory