PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00825 CCNA_00825 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (202 amino acids)

SeqID: CCNA_00825 CCNA_00825 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1703252: KHG/KDPG aldolase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00825 CCNA_00825 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
MNRTPLPPIVAILRGVKPDEVVDIAAALVEAGVGAIEVPLNSPDPVESIRRLCDAFGDRA
LCGAGTVLTPDAVDAVAEAGGRLIVTPNTDPAVIAHAVARGLTVMPGFATPTEAFAAVKA
GARALKLFPAGTFGPGHIKAVKDVLPREVAVYAVGGVGASNLDAWRAVGVDGIGVGGELY
RPGDRAADVAERAARLVAAWHG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory