PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_00866 FitnessBrowser__Caulo:CCNA_00866 (384 amino acids)

SeqID: CCNA_00866 FitnessBrowser__Caulo:CCNA_00866
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_00866 FitnessBrowser__Caulo:CCNA_00866
MGVSEFLPEDWKAATLLGRIDFGEGPTPVLVRGGRVEDVSKIAPTVADLMNAFQPGAVIP
RGEDKGPLEALDIRPVWEDPDGAAPVKLLAPVDLQCLKAAGVTFAVSTLERVIEERARGD
AGEALKIRTLLAERMGGDLKSVEPGSQGAQRLKDALIADGLWSQYLEVAIGPDAEIFTKG
PTLSSMGWGDQVGVRYDSHWNNPEPEVVLLCDGSGLIRGAALGNDVNLRDFEGRSALLLS
KAKDNNASCAIGPFFRLFDETFGLDDVRSAEVELKITGRDNFVLDGKSNMSLISRDPAVL
AGQAYGKQHQYPDGFALFLGTMFAPIQDRDTPGQGFTHKVGDRVRVSTPKLGVLENEVTT
CDKAKPWTFGISALIRNLAGRGLL