PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01039 FitnessBrowser__Caulo:CCNA_01039 (438 amino acids)

SeqID: CCNA_01039 FitnessBrowser__Caulo:CCNA_01039
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363851: Hexuronate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01039 FitnessBrowser__Caulo:CCNA_01039
MAVAVPERAPEGSPGGAAMPKLKALRWWIIGLVTLGAVINYLTRSTMGVAAPTLLKELGI
SVTEYSWITSAFQLGIMLQPICGYVLDTLGLRTGFAVFAVAWSLIAMAHGLANSWQGFAV
LRGFLGLAEGSAQPAGMKTVAIWFPAKERGFAGGVFNIGASIGSVLAPPLVVWAVLVWNW
RAAFVLTGVMGLVWVVLWLAFYRSPEKHPSMTDEERAVIAAGQEAHLEAVAARPSILSIL
KQGQFWGIALPRFLADPTWGTLAFWVPLYLSQTRGFDLKQIALFAWMPFVAADLGCMAGP
VIALFLQKRGVTLINARRIAFTLGAVLMTGMMFVGKVESAYAAIALLCLGGFAHQTLSVT
VITMASDLFRRNEVATVAGLAGMMGNLGLLLFSLLIGGLVAKVGYDPFFIALGVLDILGA
ILLWTLVKDPAARAKAAA