PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01110 FitnessBrowser__Caulo:CCNA_01110 (308 amino acids)

SeqID: CCNA_01110 FitnessBrowser__Caulo:CCNA_01110
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01110 FitnessBrowser__Caulo:CCNA_01110
MVRITVLGECMVELSPEAGDGGAPLYRMGFAGDTFNTAIYMARLGDQVAYCTALGQGDPF
SEGVLAAMRREGMDTQLVRQVENRLPGLYAIVLDEHGERKFHYWRERAPIRDLFSAHTAD
QLIEAAKASDLVYLSGVTLAVIGDIGRARLRDILAYVHSHGVAVALDFNYRPALWPSAEA
ARAALDGVVPACRYISLSSEDSRPLYGREAEDLAAEWAAAGAEVVARDESHAVNVHTPEG
RTATPAPARVKAVDTTGAGDSFNAAYLSSRLAGAAIPDAVARAHALAGIVVSHRGAIVPP
EIGLAPLG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory