PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01159 FitnessBrowser__Caulo:CCNA_01159 (451 amino acids)

SeqID: CCNA_01159 FitnessBrowser__Caulo:CCNA_01159
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 120593: L-fucose-proton symporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01159 FitnessBrowser__Caulo:CCNA_01159
MTDAAITKTTAKGGGVKLAIVYVTCLFFIWALVTNLLDPLLKTMKTVFTLTPVEASLTGF
AFFIAYGIMSLPSAAFLSKLGYARSVMVGLGGIVAGCFIAIAAAKLHTFGVFLVGLFVTA
SGVTLLQVAANPLIASMGKPEESSFRLNLSQAFNSLGAACGLWFGANFLLKGEIFEKDAV
ITDAMREQALGFVSNVYLAIGLGLALFILLIFMVRQKITEAAPKTGQLVNPFTALTSKWA
NLGAIGIFLYVGAEVAISLHLLLFLEQSHILDISAEQAGKLTTFYMVFAMIGRFAGSALL
KTIKDYVMLAIVAVGAIALCLVVILTKDMTPSAHAGTVNLLLASAPVTTGLIPAFAALLI
GLFNSIMFPTIFTLTLQRSSAPTSATSGLLCMAIVGGAFLPLAFAKIEEMTGSMAMGFAA
PLLCYVYVLWFALVAKKAPTHEIQEGVAAGH