PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01192 FitnessBrowser__Caulo:CCNA_01192 (307 amino acids)

SeqID: CCNA_01192 FitnessBrowser__Caulo:CCNA_01192
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01192 FitnessBrowser__Caulo:CCNA_01192
MAGRPMSRIAAIELGGTKVMVAFGSGPDDLSPPLRIPTTTPAETLARIEDALAAEQGRFD
AIGVASFGPIRLDPAAPDWGHILKTPKPGWSHADVAARLVRRFDRPLALDTDVNGAAVAE
GLWGAAKGLGDYAYVTVGTGVGVGLVVNGAPTHGLLHPEAGHILVRRDAALDPFTGSCPF
HGDCLEGLISGPALAARTGAPGESLSKDDPVWALVADYLAQLVANLALIASPRRVIIGGG
VGGNPQLLEQTRTRLQTHLAGYLAPLEQRSDIDAFVAAPGLGANSGLLGAVALGLRHDAI
LRQDLMP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory