PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01283 FitnessBrowser__Caulo:CCNA_01283 (398 amino acids)

SeqID: CCNA_01283 FitnessBrowser__Caulo:CCNA_01283
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 59802551: Glucose--fructose oxidoreductase precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01283 FitnessBrowser__Caulo:CCNA_01283
MRIRRGRRDAVHHLQPSRGAGAHQDQRAGALAMETISKRSLLAAGLAAGVAGLPRGAFAA
QPGRKLGYAILGLGYYATRIIMPRFAECEHSRLAALVSGTPEKLKTYGEQYGIPETHRYS
YETFDRIIDNPDVDIVYVITPNSLHRPFTERAARAGKHVMCEKPMANTVADCEAMIAACK
KAGRKLMIGYRSRFQAHNIEAIKLVRDGALGPVRTVVTDHGFTIGDPKQWRLNRALAGGG
SLMDIGIYSLNAARYLTGEEPVAVNAVESTDRSDPRFGEVEDIINFQLLFPSGATANCVS
AYSVNCNRYRVSGPKGWVEIDPATSYQGQAMRAQLGGPPAPREPAPQPKNQFSAQLDHLS
ECILTGREPIVGGDDGLKDLRVIEAIYRAAREGRTVKL