PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01463 FitnessBrowser__Caulo:CCNA_01463 (369 amino acids)

SeqID: CCNA_01463 FitnessBrowser__Caulo:CCNA_01463
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596947: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01463 FitnessBrowser__Caulo:CCNA_01463
MPSTSTAHLVTLPVPTDDLRIEKLQTLSPPAQVIGEAPATSSVAEIVGGARQAVHQILHG
QDDRLVVVIGPCSIHDPKAAIDYARRLAAERERHAGELEVIMRVYFEKPRTTVGWKGLIN
DPGLDGGFRINDGLRLARRVLLDVSAQGLPAACEFLDVTTPQYIADLVSWGAIGARTTES
QIHRELASGLSCPVGFKNGTNGDVKIAVDAVMAASQPHHFLAVTKEGRAAIATTTGNGDC
HLVLRGGKTPNYDAASVAAAAEVLSKAGLPQRLMVDVSHANSGKNHENQPAVIADVCAQV
ATGASPVMGVMIESNLVAGRQDIVQGQGLTYGQSVTDACVDWETSVRLLDDLAGAVRAGR
LARGSKSST

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory