PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01554 FitnessBrowser__Caulo:CCNA_01554 (482 amino acids)

SeqID: CCNA_01554 FitnessBrowser__Caulo:CCNA_01554
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 61252084: Polyol:NADP oxidoreductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01554 FitnessBrowser__Caulo:CCNA_01554
MTANSATSPALRLNATSYPGVVPGVAIPTYDRDKLQIGVVHFGPGAFHRAHQAHYFDQLL
AHDPRWGVCAVSLKSPGVRDALKPQDGLYTLAQLDAETTFRIVGSILEVLVAPEDPPSVF
ARLAAPTTRLVTLTVTEKGYTLSANGGLDESHPDIVHDLANPREPRSAVGYLVEGLRRRF
AAGLAPYAVVACDNLADNGWRLKAAVVAYAAKLDESLAAWIDREGRFPRTMVDSITPATD
DALRARTLAATGLEDAWPIQREAFAQWVVEDVLPADGPDLASVGVIMTDDVRGFERAKLR
LLNGVHSTLAYVGILRGHETVFEAVSDPTLAALASDMMAKDIIPTLTPPRGLDLQAYADA
ILGRFRNPEIRHLLAQIAWDGSQKLPFRILGTLTETLEAGRSIERLAVPLAAWMRFVALR
AKAGEAIVDPLQDRLLALGLAATGEASADVAAFLALDSVFPASLAGDPRFVSALEKAYAD
LG