PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_01680 FitnessBrowser__Caulo:CCNA_01680 (446 amino acids)

SeqID: CCNA_01680 FitnessBrowser__Caulo:CCNA_01680
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596096: succinylarginine dihydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_01680 FitnessBrowser__Caulo:CCNA_01680
MISAFEANCDGLVGPTHSYVGLSPGNLASTRNAGEVSNPRGAALEGLAKMRRLADLGLPQ
FVLPPHERPAVSLLRQLGFSGPDEIVLTSAWRDAPALAAAACSASPMWAANAATVTPSAD
AADGRVHFTPANLLTNLHRSLEGRQTARSLRRLFADETRFAVHDPLPAQPHFADEGAANH
VRLCAEHGGPGVNLFVWGREAWSHWDGRFPARQTKEAFEAIQRRHGAARAVFPQQGKAAI
EGGAFHNDVVCVGTRECLFFHERAFEDRATMAREVRAAASGLFEPAFVEVTEADLPMADL
VASYLFNSQLLVVPGEDRLVLLAPVETRDNPRAYAVAESLATSNGPIGRVEYVDVRQSMR
NGGGPACLRLRVVLTEAELAAANPAQRFTADLQDALADWITRRYRDRLSPADLADAKLLT
ESREALDELTQILGLGDDFYPFQRTA