PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02404 FitnessBrowser__Caulo:CCNA_02404 (278 amino acids)

SeqID: CCNA_02404 FitnessBrowser__Caulo:CCNA_02404
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118129: Sulfate/thiosulfate import ATP-binding protein cysA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02404 FitnessBrowser__Caulo:CCNA_02404
MTAPAFDAPGAETPDAERYPIEVRGLVSRFGDNVVHDGLDLKVEQGEILGVVGGSGSGKS
VLLNSIIGLKTPDDGHVRLFGGDMRVASRRRWSSVERRWGVLFQQGALFSNLTVRENVAA
PLYEHTRLPRSEVEAIADLKIAMVGLPARAATLKPAELSGGMRKRAGLARALAMDPELLF
LDEPTAGLDPIGAQAFDALIKDLSDSLELTVFMITHDLDSLYTITDRVAVLADKKVVTVA
PVGELERSDHPWIKQYFLGPRGRAAAAAKEHAKSRTDD