PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_02687 FitnessBrowser__Caulo:CCNA_02687 (426 amino acids)

SeqID: CCNA_02687 FitnessBrowser__Caulo:CCNA_02687
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 118627: Soluble hydrogenase, small subunit]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_02687 FitnessBrowser__Caulo:CCNA_02687
MRAAGGPRRTHSDHRQDHAMTDTFNELDHPARLLMGPGPINVHPRVLRAMSVQLLGQFDP
EFTGYMNEVMALYRGVFQTQNRWTFTIDGTSRAGIEAALVSTLQPGDDVVVVNAGRFGLL
LAEIAERCDAKVTFVEASWGAVVDPQAVEDAVKRVKPRLVACVHGDTSTTMAQPLGEIGA
ICRAHGALMYVDATATLSGMDVPVDAWGADIVTAGLQKCLGGPSGSAPITISDQAAEHIF
SRRHVEKGLAGTGGAAGAGRRIASNYFDLAMIMDYWSEKRLNHHTECAPMLFAARECARL
VLEEGLPARFDRHAQAGAAMTAGLEAMGLSIYGDKAHKMTNVTGIWVPKGVDYDRVKARM
RTDFEIEIGSAFGPLTGKIWRIGTMGVNARKHAVLQTLAAFEAVLRWEGFSAPAGAGVDA
AAKVYG