PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03149 FitnessBrowser__Caulo:CCNA_03149 (806 amino acids)

SeqID: CCNA_03149 FitnessBrowser__Caulo:CCNA_03149
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15596923: periplasmic beta-glucosidase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03149 FitnessBrowser__Caulo:CCNA_03149
MNTTLTRRLFGASLAALSAAALPSLAQAAGQAPKTSGGKPLYKDPTQPVDARIQDLLSRM
TLEEKAAQLIGIWLTKAKIQTPEGEFSAEQASKNFPHGLGQISRPSDRKGAKPVTVIGAA
AGADDGAINRNAAETARYTNAAQKWAIEKTRLGIPLLMHDEALHGYVARDATSFPQSIAL
ASTFDTELTEKIFAVAAREMRARGSNLALAPVVDVARDPRWGRIEETYGEDPHLCAEIGL
ASIRGFQGATLPLAKDKVFVTLKHMTGHGQPENGTNVGPAQIAERTLRENFFPPFERAVT
ELPVRAVMPSYNEIDGVPSHANRWLLTKILREEWGYKGSIQSDYFAIKEMISRHKLTSDL
GETAVMAMRAGVDVELPDGEAYALIPELVKAGRIPQFEVDAAVARVLEMKFQAGLFENPY
CDEKTADAKTATPDAVALAREAARKSVVLLKNDKGLLPLDGKKFKRMALLGTHAKDTPIG
GYSDIPRHVVSIHEGLTAEAKAQGFALDYAEAVRITEQRIWAQDAVNFTDPAVNAKLIAE
AVEVAKKADIVVMVLGDNEQTSREAWADHHLGDRDSLDLMGQQNDLARAIFDLGKPTVVF
LLNGRPLSINLLKERADAIIEGWYLGQETGHAAADVLFGRANPGGKLPVSIARDVGQLPV
YYNRKPTARRGYLDGETTPLYPFGFGLSYTTFDVSAPRLAKAKIGQGETVKVEVDVTNTG
KVAGDEVVQLYVHDEAASVTRPVLELKHFKRVTLAPGAKTTVTFEIKPSDLWMWNLDMKR
VVEPGDFSILVGPNSVDLKKTTLTVA