PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on CCNA_03184 FitnessBrowser__Caulo:CCNA_03184 (564 amino acids)

SeqID: CCNA_03184 FitnessBrowser__Caulo:CCNA_03184
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>CCNA_03184 FitnessBrowser__Caulo:CCNA_03184
MTDTVSENTNETLILPGLTGLLREAADAVALFVAEAKPAVLAHIAPQGGKVDRKLADVHQ
HRVHGYGWYASYAELMNQVAGWAQRLEAEGRFGEIEALLAQLLFSEYSAQLVGGVPMNQG
EIVRPQHLVEDRAVLNRLTSEAMTRLAAEGGSQAVKARIAQRLAEARGRPTLEQTGLDET
FEMIRDQFHAFAEEKVTPFAHEWHLKDELIPLELVQELGELGVFGLTIPEEFGGSGMGKT
AMCVVSEELSRAWIGVGSLATRSEIAGELILTGGTDAQKEYWLPRIASAEILPTAVFTEP
NTGSDLGALRTRAELKGDSYVVTGNKTWITHAARADVMTLLVRTDPATTDYRGLSMLLAP
KPRGTDEAPFPAEGMSGGEIGVIGYRGMKEYELGFDGFTVPAENLLGGVTGQGFKQLMAT
FESARIQTAARAVGVAQAALEVGLSYALDRKQFGQPIFDFPRVHNKLAMMAAEIMGVRQL
TYFAAHQKDEGKRCDLEAGMAKLIAARVAWAAADNALQIHGGNGFAMEYAASRLLADARI
LNIFEGAGEIQAQVIARRLLDGGN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory